Andy, I am honestly not trying to be a smart a$$ but just asking questions to learn.
When there is gatoring or whatever term we want to apply to it,,,, and we shoot, does the copper, dirt and or moly fill these cracks to help smooth things out? Or rather fill the rough areas (gaps, cracks or whatever)?
Back on subject there was a thread last year late, I think that addressed the cleaning of a moly barrel. There were several proven methods that came to light.
There is also a cleaner but I dont remember who makes it that claims to clean moly.
Patch out was one of them
PATCH-OUT™ is not safe for varnish , shellac or old oil type finishes. It will remove them. However PATCH-OUT is safe for all the modern finishes ( poly-urethanes, and epoxys.) It will dissolve brass, bronze, and copper. Most aluminums (AR-15/M-16 receivers and all aluminum pistol frames) are safe with PATCH-OUT ™ , but some will discolor to a dull grey. IF you have any doubt try a test area where it will not be visible. PATCH-OUT ™ will NOT DISSOLVE LEAD but it will degrade lead so that it can be pushed out with a patch.WIPE-OUT™ contains no acid and no ammonia.PATCH-OUT™ CANNOT CAUSE RUST.It will not gum, or form solids in either the action or the barrel .PATCH-OUT™ is safe for all barrel steels, both stainless and carbon steel. Note: PATCH-OUT will remove Molybdenum.
http://www.paulcompany.com/patchout.htm
Same people that make wipe out and several others.