I see it somewhat differently
In the first place, any directions which say "set it to touch the shellholder" seem inadequate. IME chambers and dies and such vary by as much as .008 in length in modern firearms. And you're trying for a thou???
I agree with Boyd, check for space with the case in the die and if there's some gap you can go down more...... but I doubt that's the case eh?
I've had to shorten nearly all of my dies and I order custom dies with a huge gap. I just tell the diemaker to whack off an extra 20-30thou, I WANT a gap.
My goal is to bump the shoulder so slightly that I can barely measure it. My method is to keep working the die down until I CAN measure shoulder setback (normally around .005, up to .001) and WRITE EVERYTHING DOWN!!! Now I've got a baseline from which to work.
Now that I KNOW the die setting where the shoulder moves, I can check the other parts of the die for sizing effect. Generally I'll find that with the shoulder bumped back a thou the bolt handle just drops.......... and NOW I can set the die by "feel"...... I use a stack of Skip's Die Shims for this.
I've found nothing to support the contention that having the die touch the shellholder is more consistent, in fact I refuse to ever let a die touch down.... I'll take it to my grinder if I have to.
So there's some more opinion!
al